Publications


Gut Microbiome dysbiosis and immune activation correlate with somatic and neuropsychiatric symptoms in COVID-19 patients;
Scalzo, PL, Marshall, AG, Soriano, S, Curry, K, Dulay, M, Hodics, T, Quigley, EMM, Treangen, TJ, Piskorz, MM & Villapol, S 2025, , Journal of Translational Medicine, vol. 23, no. 1, 327. https://doi.org/10.1186/s12967-025-06348-y

Complement activity and autophagy are dysregulated in the lungs of patients with nonresolvable COVID-19 requiring lung transplantation;
Shivshankar, P, Mueller-Ortiz, SL, Domozhirov, AY, Bi, W, Collum, SD, Doursout, MF, Patel, M, LeFebvre, IN, Akkanti, B, Yau, S, Huang, HJ, Hussain, R & Karmouty-Quintana, H 2025, , Respiratory Research, vol. 26, no. 1, 68. https://doi.org/10.1186/s12931-025-03152-6

Nitric oxide inhibits ten-eleven translocation DNA demethylases to regulate 5mC and 5hmC across the genome;
Palczewski, MB, Kuschman, HP, Hoffman, BM, Kathiresan, V, Yang, H, Glynn, SA, Wilson, DL, Kool, ET, Montfort, WR, Chang, J, Petenkaya, A, Chronis, C, Cundari, TR, Sappa, S, Islam, K, McVicar, DW, Fan, Y, Chen, Q, Meerzaman, D, Sierk, M & Thomas, DD 2025, , Nature Communications, vol. 16, no. 1, 1732. https://doi.org/10.1038/s41467-025-56928-1

Disparities in liver transplantation for metabolic dysfunction-associated steatohepatitis-associated hepatocellular carcinoma;
Victor, DW, Kodali, S, Noureddin, M, Brombosz, EW, Lopez, A, Basra, T, Graviss, EA, Nguyen, DT, Saharia, A, Connor, AA, Abdelrahim, M, Cheah, YL, Simon, CJ, Hobeika, MJ, Mobley, CM & Ghobrial, RM 2025, , World Journal of Transplantation, vol. 15, no. 3, 101997. https://doi.org/10.5500/wjt.v15.i3.101997

CRISPR-Cas9 engineering of human T regulatory cells – Design and optimization of a manufacturing process;
Shimon, O, Dean, AM, Cohen, S, Moser, AL, Dacso, CC, Gilad, Y, Lonard, DM & OMalley, BW 2025, , Molecular Immunology, vol. 184, pp. 13-21. https://doi.org/10.1016/j.molimm.2025.05.019

Efficacy and safety of acalabrutinib with best supportive care versus best supportive care in patients with COVID-19 requiring hospitalization;
Scheinberg, P, Khoshnevis, MR, Robinson, PA, Guerreros, A, Sato, VAH, Fonseca, BAL, Prozesky, HW, Romero, JOC, Fogliatto, L, Meisenberg, BR, Park, DJ, Gupta, A, Patel, P, Townsley, DM, Zheng, L & Munugalavadla, V 2025, , ImmunoHorizons, vol. 9, no. 7, vlaf023. https://doi.org/10.1093/immhor/vlaf023

A novel population-characteristic weighted sparse model for accurate respiratory motion prediction in CT-guided lung cancer interventions;
Xia, GR, Wang, T, Xu, J, Li, X, Wang, H, Wong, STC & Li, H 2025, , Computerized Medical Imaging and Graphics, vol. 123, 102557. https://doi.org/10.1016/j.compmedimag.2025.102557

New T2T assembly of Cryptosporidium parvum IOWA II annotated with Legacy-Compatible Gene identifiers;
Baptista, RDP, Xiao, R, Li, Y, Glenn, TC & Kissinger, JC 2025, , Scientific Data, vol. 12, no. 1, pp. 1039. https://doi.org/10.1038/s41597-025-05364-3

Blood bacterial DNA signatures in a prospective cohort of patients with MASLD cirrhosis;
Kwan, SY, Dolapchiev, LI, Sanchez, CI, Calderone, TL, Sanchez, JI, Bhongade, MB, El Sabagh, A, Cleere, DW, Gupta, N, Jalal, PK, Victor, DW & Beretta, L 2025, , Hepatology Communications, vol. 9, no. 7, e0722. https://doi.org/10.1097/HC9.0000000000000722