Houston Methodist. Leading Medicine.
Houston Methodist. Leading Medicine

2009 Journals

Systems Medicine and Bioengineering - 2009 Journals

Bioinformatics and Systems Biology

Liu T, Peng H, Zhou X.
Imaging informatics for personalised medicine: applications and challenges.
I. J. Functional Informatics and Personalised Medicine. 2009 2(2):125-135 PMID: 19862353
Bo Geng, Xiaobo Zhou, Y. S. Hung
Growing enzyme gene networks by integration of gene expression, motif sequence, and metabolic information. Pattern Recognition. 2009 42(4): 557-561. DOI: 10.1016/j.patcog.2008.09.037
Zhang S, Degraba TJ, Wang H, Hoehn GT, Gonzales DA, Suffredini AF, Ching WK, Ng MK, Zhou X, Wong ST.
A novel peak detection approach with chemical noise removal using short-time FFT for prOTOF MS data. Proteomics. 2009 Aug 13;9(15):3833-3842. PMID: 19681055
Chang CC, Zhou X, Taylor JJ, Huang WT, Ren X, Monzon F, Feng Y, Rao PH, Lu XY, Fabio F, Hilsenbeck S, Creighton CJ, Jaffe ES, Lau CC.
Genomic profiling of plasmablastic lymphoma using array comparative genomic hybridization (aCGH): revealing significant overlapping genomic lesions with diffuse large B-cell lymphoma.
J Hematol Oncol. 2009 Nov 12;2:47. PMID: 19909553
Jin G, Zhou X, Cui K, Zhang XS, Chen L, Wong ST.
A cross-platform method for identifying candidate network biomarkers for prostate cancer.
IET Systems Biology. 2009 Nov;3(6):505-12. PMID: 19947776
G Jin, K.Cui, X. Zhou, Wong ST.
Unraveling the signal-transduction networks in cancer metastasis.
IEEE Signal Processing Magazine. Volume 26, Issue 5, September 2009 Page(s):129 - 132. DOI: 10.1109/MSP.2009.933384
Fan J, Zhou X, Dy JG, Zhang Y, Wong ST.
An Automated Pipeline for Dendrite Spine Detection and Tracking of 3D Optical Microscopy Neuron Images of In Vivo Mouse Models.
Neuroinformatics. 2009 Jun;7(2):113-30. PMID: 19434521
Zhou X, Wang H, Wang J, Wang Y, Hoehn G, Azok J, Brennan ML, Hazen SL, Li K, Chang SF, Wong ST.
Identification of biomarkers for risk stratification of cardiovascular events using genetic algorithm with recursive local floating search. Proteomics. 2009 Apr;9(8):2286-94. PMID: 19337989
Donggang Yu, Tuan D. Pham, Xiaobo Zhou, Stephen T. C. Wong
Recognition and analysis of cell nuclear phases for high-content screening based on morphological features. Pattern Recognition. 2009 42(4): 498-508. DOI: 10.1016/j.patcog.2008.08.003
Yin Z, Zhou X, Sun Y, Wong ST.
Online phenotype discovery based on minimum classification error model.
Pattern Recognition. 2009 Apr; 42(4): 509-522. PMID: 20161245
Zhou X, Li F, Yan J, Wong ST.
A novel cell segmentation method and cell phase identification using Markov model.
IEEE Trans Inf Technol Biomed. 2009 Mar;13(2):152-7. PMID: 19272857
Wang J, Zhou X, Li F, Bradley PL, Chang SF, Perrimon N, Wong ST.
An image score inference system for RNAi genome-wide screening based on fuzzy mixture regression modeling.
J Biomed Inform. 2009 Feb;42(1):32-40. PMID: 18547870
Firdaus Janoos,Kishore Mosaliganti, Xiaoyin Xu,Raghu Machiraju, Kun Huang,Stephen T.C. Wong.
Robust 3D Reconstruction and Identification of Dendritic Spines from Optical Microscopy Imaging.
Med Image Anal. 2009 Feb;13(1):167-79. PMID: 18819835
Kamali M, Day LJ, Brooks DH, Zhou XB, and O’Malley DM .
Automated Identification of Neurons in 3D Confocal Datasets from Zebrafish Brainstem.
Journal of Microscopy. 2009 Jan;233(1):114-31. PMID: 19196418
Wu LY, Zhou X, Li F, Yang X, Chang CC, Wong ST.
Conditional Random Pattern Algorithm for LOH Inference and Segmentation.
Bioinformatics 2009 Vol. 25, No. 1, 61-67. PMID: 18974074
Huang WT, Yang X, Zhou X, and Chang CC.
Multiple distinct clones may co-exist in different lineages in myelodysplastic syndromes.
Leukemia Research.2009 33(6):847-853. PMID: 19084271
Xiaorong Yang, Xiaobo Zhou, Wan-Ting Huang, Lingyun Wu, Federico A. Monzon, Chung-Che Chang and Stephen T.C. Wong.
Pattern-selection Based Power Analysis and Discrimination of Low- and High-Grade Myelodysplastic Syndromes Study Using SNP Arrays.
Plos One. 2009 4(4):e5054. PMID: 19352488

Biotechnologies and Drug Development

Zhao H, Zhu J, Cui K, Xu X, O'Brien M, Wong KK, Kesari S, Xia W, Wong ST.
Bioluminescence Imaging Reveals Inhibition of Tumor Cell Proliferation by Alzheimer's Amyloid beta Protein.
Cancer Cell Int. 2009 Jun 1;9:15. PMID: 19480719
Xia X, Zhang SC.
Differentiation of neuroepithelia from human embryonic stem cells.
Methods Mol Biol. 2009;549:51-8. PMID: 19378195
Xia X, Lessmann V, Martin TF.
Imaging of evoked dense-core-vesicle exocytosis in hippocampal neurons reveals long latencies and kiss-and-run fusion events.
J Cell Sci. 2009 Jan 1;122(Pt 1):75-82. PMID: 19066284
Zhao H, Tang C, Cui K, Ang BT, Wong ST.
A screening platform for glioma growth and invasion using bioluminescence imaging.
J Neurosurg. 2009 Aug;111(2):238-46. PMID: 19199503
Dominik Beck and Stephen Wong.
Current Highlights in Nanomedicine from Engineering and Biomedical perspectives.
Journal of Nanomedicine. 2009 Jul;4(5):515-7.
Tulpar A, Wang Z, Jang CH, Jain V, Heflin JR, Ducker WA.
Nanoscale patterning of ionic self-assembled multilayers.
Nanotechnology. 2009 Apr 15;20(15):155301. PMID: 19420543
Wang Y, Cui K, Zhao H, Li D, Wang W, Zhu Y.
Bushen Ningxin Decoction pharmacological serum promotes the proliferation and suppresses the apoptosis of murine osteoblasts through MAPK pathway.
J Ethnopharmacol. 2009 Mar 18;122(2):221-6. PMID: 19330912

Medical Imaging, Biophotonics, and Image-Guided Therapy

Jeyarama S. Ananta, Michael L. Matson, Annie M. Tang, Trinanjana Mandal, Stephen Lin, Kelvin Wong, Stephen T. Wong and Lon J. Wilson
Single-Walled Carbon Nanotube Materials as T2-Weighted MRI Contrast Agents.
J. Phys. Chem. C, 2009, 113 (45), pp 19369-19372. DOI: 10.1021/jp907891n
Zhiyong Wang, J. R. Heflin, Kevin Vancott, Rogers H. Stolen, Siddharth Ramachandran and Samir Ghalmi.
Biosensors Employing Ionic Self-Assembled Multilayers Adsorbed on Long Period Fiber Gratings.
Sensors & Actuators: B. Chemical,2009 139, pp.618–623. DOI: 10.1016/j.snb.2009.02.073
Kwong KK, Kloetzer L, Wong KK, Ren JQ, Kuo B, Jiang Y, Chen YI, Chan ST, Young GS, Wong ST.
Bioluminescence Imaging of Heme Oxygenase-1 Upregulation in the Gua Sha Procedure.
J Vis Exp. 2009 Aug 28;(30). pii: 1385. PMID: 19718012
Zhiyong Wang and Hai Xiao.
Optical Intensity-Based Long-Period Fiber Grating Biosensors and Biomedical Applications.
IEEE Signal Processing Magazine 2009 pp.121-127. DOI: 10.1109/MSP.2008.931092
Wong KK, Tam CP, Ng M, Wong ST, Young GS.
Improved residue function and reduced flow dependence in MR perfusion using least-absolute-deviation regularization.
Magn Reson Med. 2009 Jan 22;61(2):418-428. PMID: 19161133
Xue Z, Shen D.
A new statistically-constrained deformable registration framework for MR brain images.
Int J Med Eng Inform. 2009 Jan 1;1(3):357-367. PMID: 20011232
Nie J, Xue Z, Liu T, Young GS, Setayesh K, Guo L, Wong ST.
Automated Brain Tumor Segmentation Using Spatial Accuracy-Weighted Hidden Markov Random Field.
Comput Med Imaging Graph. 2009 Sep;33(6):431-41. PMID: 19446435

Special Journal Issue

Wong STC (ed.).
Introduction to the special issue of "Advances in Molecular Imaging".
European Journal of Radiology. 2009 70, 199-200. PMID: 19261413