Houston Methodist. Leading Medicine.
Houston Methodist. Leading Medicine

2008 Journals

Systems Medicine and Bioengineering - 2008 Journals

Peng Zhang, Houqiang Li, Xiaobo Zhou, Stephen T. C. Wong.
Peak detection using peak tree approach for mass spectrometry data.
Int. J. Hybrid Intell. Syst. 2008 5(4): 197-208.
 
Xia X, Ayala M, Thiede BR, Zhang SC.
In vitro- and in vivo-induced transgene expression in human embryonic stem cells and derivatives.
Stem Cells. 2008 Feb;26(2):525-33. PMID: 18032700
 
J. Chen, J. Zhu, H.-H. Cho, K. Cui, Fuhai. Li, X. Zhou, J. T. Rogers, S. T. Wong, X. Huang.
Differential Cytotoxicity of Metal Oxide Nanoparticles.
Journal of Experimental Nanoscience. 2008 3(4): 321-328.
 
Firdaus Janoos, Boonthanome Nouansengsy, Xiaoyin Xu, Raghu Machiraju, Stephen T. C. Wong.
Classification and Uncertainty Visualization of Dendritic Spines from Optical Microscopy Imaging.
Comput. Graph. Forum 2008 27(3): 879-886.
 
Pham TD, Wang H, Zhou X, Beck D, Brandl M, Hoehn G, Azok J, Brennan ML, Hazen SL, Li K, Wong ST.
Computational prediction models for early detection of risk of cardiovascular events using mass spectrometry data.
IEEE Trans Inf Technol Biomed. 2008 Sep;12(5):636-43. PMID: 18779078
 
Xia Z, Huang X, Zhou X, Sun Y, Ntziachristos V, Wong ST.
Registration of 3-D CT and 2-D flat images of mouse via affine transformation.
IEEE Trans Inf Technol Biomed. 2008 Sep;12(5):569-78. PMID: 18779071
 
Zhang K, Xiong H, Zhou X, Yang L, Wang YL, Wong ST
A confident scale-space shape representation framework for cell migration detection.
J Microsc. 2008 Sep;231(3):395-407. PMID: 18754994
 
Jin G, Zhou X, Wang H, Zhao H, Cui K, Zhang XS, Chen L, Hazen SL, Li K, Wong ST.
The knowledge-integrated network biomarkers discovery for major adverse cardiac events.
J Proteome Res. 2008 Sep;7(9):4013-4021. PMID: 18665624
 
Zhang Y, Zhou X, Lu J, Lichtman J, Adjeroh D, Wong ST.
3D Axon structure extraction and analysis in confocal fluorescence microscopy images.
Neural Comput. 2008 Aug;20(8):1899-927. PMID: 18336075
 
Stephen T.C. Wong, Maciej Ogorzalek, Joseph Chang
Editorial to the special issue on computational systems biology.
Proceedings of The IEEE. 2008 August,Vol.96,No.8.
 
Zhou X, Wong ST.
Computational Systems Bioinformatics and Bioimaging for Pathway Analysis and Drug Screening.
Proc IEEE Inst Electr Electron Eng. 2008 Aug 1;96(8):1310-1331. PMID: 20011613
 
Yin Z, Zhou X, Bakal C, Li F, Sun Y, Perrimon N, Wong ST.
Using iterative cluster merging with improved gap statistics to perform online phenotype discovery in the context of high-throughput RNAi screens.
BMC Bioinformatics. 2008 Jun 5,9(1):264. PMID: 18534020
 
Wang Y, Zhou X, Wang H, Li K, Yao L, Wong ST.
Reversible jump MCMC approach for peak identification for stroke SELDI mass spectrometry using mixture model.
Bioinformatics (ISMB 08). 2008, Vol. 24 , pages i407-i413. PMID: 18586741
 
Chahrour M, Jung SY, Shaw C, Zhou X, Wong ST, Qin J, Zoghbi HY.
MeCP2, a key contributor to neurological disease, activates and represses transcription.
Science. 2008 May 30;320(5880):1224-9. PMID: 18511691
 
Li F, Zhou X, Zhu J, Xia W, Ma J, Wong ST.
Workflow and methods of high-content time-lapse analysis for quantifying intracellular calcium signals.
Neuroinformatics. 2008 Summer;6(2):97-108. PMID: 18506641
 
Kemi Cui, Xiaoyin Xu, Hong Zhao, Stephen TC Wong
A quantitative study of factors affecting in vivo bioluminescence imaging.
Luminescence. 2008 Sep-Oct;23(5):292-5. PMID: 18452141
 
Chen C, Li H, Zhou X, Wong ST
Constraint factor graph cut-based active contour method for automated cellular image segmentation in RNAi screening.
J Microsc. 2008 May,230 (Pt 2):177-91. PMID: 18445146
 
Liu T, Nie J, Tarokh A, Guo L, Wong ST.
Reconstruction of central cortical surface from brain MRI images: method and application.
NeuroImage. 2008 Apr 15,pp 991-1002. PMID: 18289879
 
Geng, B, Zhou, X, Zhu, J, Hung, YS, and Wong, STC
Comparison of reversible-jump Markov-chain-Monte-Carlo learning approach with other methods for missing enzyme identification.
Journal of Biomedical Informatics. April 2008,Volume 41, Number 2: 272-281. PMID: 17950040
 
Tianming Liu, Winnie CW Chu, Geoffrey Young, Kaiming Li, Benson HY Yeung, Lei Guo, Gene CW Man,Wynnie WM Lam,Stephen TC Wong, Jack CY Cheng
MR analysis of regional brain volume in adolescent idiopathic scoliosis: neurological manifestation of a systemic disease.
Journal of Magnetic Resonance Imaging. 2008 Apr;27(4):732-6. PMID: 18302230
 
Cai H, Xu X, Lu J, Lichtman J, Yung SP, Wong ST
Using nonlinear diffusion and mean shift to detect and connect cross-sections of axons in 3D optical microscopy images.
Med Image Anal. 2008 Dec;12(6):666-75. PMID: 18440853
 
Wong KK, Yang ES, Wu EX, Tse HF, Wong ST.
First-pass myocardial perfusion image registration by maximization of normalized mutual information.
Journal of Magnetic Resonance Imaging. 2008 Mar,27(3):529-37. PMID: 18183575
 
Tianming Liu, Gang Li, Jingxin Nie, Ashley Tarokh, Xiaobo Zhou, Lei Guo, Jarema Malicki, Weiming Xia,Stephen TC Wong
An automated method for cell detection in zebrafish.
Neuroinformatics. 2008 Spring;6(1):5-21. PMID: 18288618
 
Tianming Liu, Jingxin Nie, Gang Li, Lei Guo, Stephen TC Wong
ZFIQ: a software package for zebrafish biology.
Bioinformatics. 2008 Feb 1,Vol 24: 438-439. PMID: 18089619
 
Wang J, Zhou X, Bradley PL, Chang SF, Perrimon N, Wong ST.
Cellular phenotype recognition for high-content RNA interference genome-wide screening.
J Biomol Screen. 2008 Jan;13(1):29-39. PMID: 18227224
 
Wang M, Zhou X, Li F, Huckins J, King RW, Wong ST.
Novel cell segmentation and online SVM for cell cycle phase identification in automated microscopy.
Bioinformatics. 2008 Jan 1,24(1):94-101. PMID: 17989093
 
Yan P, Zhou X, Shah M, Wong ST.
Automatic segmentation of high-throughput RNAi fluorescent cellular images.
IEEE Trans on Information Technology in Biomedicine. 2008 Jan,12(1):109-17. PMID: 18270043
 
Zhao H, Cui K, Muschenborn A, Wong ST.
Progress of engineered antibody-targeted molecular imaging for solid tumors.
Mol Med Report. 2008 Jan-Feb;1(1):131-4. PMID: 21479389
 
Mok VC, Liu T, Lam WW, Wong A, Hu X, Guo L, Chen XY, Tang WK, Wong KS, Wong S.
Neuroimaging predictors of cognitive impairment in confluent white matter lesion: volumetric analyses of 99 brain regions.
Dement Geriatr Cogn Disord. 2008;25(1):67-73. PMID: 18042992
 
Xia Z, Huang X, Zhou X, Sun Y, Ntziachristos V, Wong ST.
Registration of 3-D CT and 2-D flat images of mouse via affine transformation.
IEEE Trans Inf Technol Biomed. 2008 Sep;12(5):569-78. PMID: 18779071
 
Geng B, Zhou X, Hung YS, Wong S.
Comparison of Bayesian and regression models in missing enzyme identification.
Int J Bioinform Res Appl. 2008;4(4):363-74. PMID: 19008181
 
Li G, Liu T, Nie J, Guo L, Chen J, Zhu J, Xia W, Mara A, Holley S, Wong ST.
Segmentation of touching cell nuclei using gradient flow tracking.
J Microsc. 2008 Jul;231(Pt 1):47-58. PMID: 18638189
 
Tang AM, Kacher DF, Lam EY, Wong KK, Jolesz FA, Yang ES.
Simultaneous ultrasound and MRI system for breast biopsy: compatibility assessment and demonstration in a dual modality phantom.
IEEE Trans Med Imaging. 2008 Feb;27(2):247-54. PMID: 18334446
 

Special Journal Issue

Wong ST, Chang J, Ogorzalek M (eds).
Special issues of Computational Systems Biology. Proceedings of IEEE, 2008 Aug;96(8).