Houston Methodist. Leading Medicine.
Houston Methodist. Leading Medicine

2013 Journals

Systems Medicine and Bioengineering - 2013 Journals


Systems Medicine and Bioinformatics

Liu T, Ren D, Zhu X, Yin Z, Jin G, Zhao Z, Robinson D, Li X, Wong K, Cui K, Zhao H, Wong ST.
Transcriptional signaling pathways inversely regulated in Alzheimer's disease and glioblastoma multiform. Sci Rep. 2013 Dec 10;3:3467. PMID: 24322672
 
Liu S, Cong Y, Wang D, Sun Y, Deng L, Liu Y, Martin-Trevino R, Shang L, McDermott SP, Landis MD, Hong S, Adams A, D'Angelo R, Ginestier C, Charafe-Jauffret E, Clouthier SG, Birnbaum D, Wong ST, Zhan M, Chang JC, Wicha MS.
Breast Cancer Stem Cells Transition between Epithelial and Mesenchymal States Reflective of their Normal Counterparts. Stem Cell Reports. 2013 Dec 27;2(1):78-91. PMID: 24511467
 
Sun Y, Yolitz J, Wang C, Spangler E, Zhan M, Zou S.
Aging studies in Drosophila melanogaster. Methods Mol Biol. 2013;1048:77-93. PMID: 23929099
 
Jin G, Wong ST.
Toward better drug repositioning: prioritizing and integrating existing methods into efficient pipelines. Drug Discov Today. 2013 Nov 14. PMID: 24239728
 
Zhao H, Jin G, Cui K, Ren D, Liu T, Chen P, Wong S, Li F, Fan Y, Rodriguez A, Chang J, Wong ST.
Novel modeling of cancer cell signaling pathways enables systematic drug repositioning for distinct breast cancer metastases. Cancer Res. 2013 Oct 15;73(20):6149-63. PMID: 24097821
 
Yan B, Li H, Yang X, Shao J, Jang M, Guan D, Zou S, Van Waes C, Chen Z, Zhan M.
Unraveling regulatory programs for NF-kappaB, p53 and microRNAs in head and neck squamous cell carcinoma. PLoS One. 2013 Sep 19;8(9):e73656. PMID: 24069219
 
Glasgow SM, Laug D, Brawley VS, Zhang Z, Corder A, Yin Z, Wong ST, Li XN, Foster AE, Ahmed N, Deneen B.
The miR-223/Nuclear Factor I-A Axis Regulates Glial Precursor Proliferation and Tumorigenesis in the CNS. J Neurosci. 2013 Aug 14;33(33):13560-13568. PMID: 23946414
 
Yin Z, Sadok A, Sailem H, McCarthy A, Xia X, Li F, Garcia MA, Evans L, Barr AR, Perrimon N, Marshall CJ, Wong ST, Bakal C.
A screen for morphological complexity identifies regulators of switch-like transitions between discrete cell shapes.
Nat Cell Biol. 2013 Jul;15(7):860-71. PMID: 23748611
 
Fu C, Jin G, Gao J, Zhu R, Ballesteros-Villagrana E, Wong ST.
DrugMap Central: an on-line query and visualization tool to facilitate drug repositioning studies.
Bioinformatics. 2013 Jul 15;29(14):1834-6. PMID: 23681121
 
Zhu Y, Li F, Vadakkan TJ, Zhang M, Landua J, Wei W, Ma J, Dickinson ME, Rosen JM, Lewis MT, Zhan M, Wong ST.
Three-dimensional vasculature reconstruction of tumour microenvironment via local clustering and classification. Interface Focus, special issue of Mathematics of the Integrative Cancer Biology Program, 2013 Aug 6;3(4):20130015. PMID: 24511379
 
Yu KD, Zhu R, Zhan M, Rodriguez AA, Yang W, Wong ST, Makris A, Lehmann BD, Chen X, Mayer IA, Pietenpol JA, Shao ZM, Symmans F, Chang JC.
Identification of Prognosis-Relevant Subgroups in Patients with Chemoresistant Triple Negative Breast Cancer.
Clin Cancer Res. 2013; 19:2723-2733. PMID: 23549873
 
Deng T, Lyon CJ, Minze LJ, Lin J, Zou J, Liu JZ, Ren Y, Yin Z, Hamilton DJ, Reardon PR, Sherman V, Wang HY, Phillips KJ, Webb P, Wong ST, Wang RF, Hsueh WA.
Class II Major Histocompatibility Complex Plays an Essential Role in Obesity-Induced Adipose Inflammation.
Cell Metab. 2013 Mar 5;17(3):411-22. PMID: 23473035
 
Yang J, Fan J, Li Y, Li F, Chen P, Fan Y, Xia X, Wong ST.
Genome-Wide RNAi Screening Identifies Genes Inhibiting the Migration of Glioblastoma Cells.
PLoS One. 2013 Apr 12;8(4):e61915. PMID: 23593504
 
Li F, Yin Z, Jin G, Zhao H, Wong ST.
Bioimage Informatics for Systems Pharmacology.
PLoS Comput Biol. 2013 Apr;9(4):e1003043. PMID: 23633943
 
Li F, Tan H, Singh J, Yang J, Xia X, Bao J, Ma J, Zhan M, Wong ST.
A 3D multiscale model of cancer stem cell in tumor development.
BMC Syst Biol. 2013;7 Suppl 2:S12. PMID: 24564919
 
Schott AF, Landis MD, Dontu G, Griffith KA, Layman RM, Krop I, Paskett LA, Wong H, Dobrolecki LE, Lewis MT, Froehlich AM, Paranilam J, Hayes DF, Wicha MS, Chang JC.
Preclinical and Clinical Studies of Gamma Secretase Inhibitors with Docetaxel on Human Breast Tumors.
Clin Cancer Res. 2013 Mar 15;19(6):1512-24. PMID: 23340294
 
Chen P, Fan Y, Man TK, Hung Y, Lau CC, Wong ST.
A gene signature based method for identifying subtypes and subtype-specific drivers in cancer with an application to medulloblastoma.
BMC Bioinformatics. 2013;14 Suppl 18:S1. PMID: 24564171
 
Wang L, Liu Q, Zhao H, Cui K, Yao L, Nie F, Jin G, Hao A, Wong ST.
Differential effects of low- and high-dose GW2974, a dual epidermal growth factor receptor and HER2 kinase inhibitor, on glioblastoma multiforme invasion.
J Neurosci Res. 2013 Jan;91(1):128-37. PMID: 23115024
 

Biomedical Imaging, Biophotonics, and Image-Guided Therapy

Chen Y, Mancuso J, Zhao Z, Li X, Cheng J, Roman G, Wong ST.
Vasodilation by in vivo activation of astrocyte endfeet via two-photon calcium uncaging as a strategy to prevent brain ischemia.
J Biomed Opt. 2013 Dec 1;18(12):126012. PMID: 24343443
 
Xu X, Cheng J, Thrall MJ, Liu Z, Wang X, Wong ST.
Multimodal non-linear optical imaging for label-free differentiation of lung cancerous lesions from normal and desmoplastic tissues.
Biomedical Optics Express. 2013 Nov 15;4(12):2855-68. PMID: 24409386
 
Mancuso JJ, Chen Y, Li X, Xue Z, Wong ST.
Methods of Dendritic Spine Detection: from Golgi to High Resolution Optical Imaging.
Neuroscience. 2013 Oct 22;251:129-40. PMID: 22522468
 
Su P, Yang J, Lu K, Yu N, Wong ST, Xue Z.
A fast CT and CT-fluoroscopy registration algorithm with respiratory motion compensation for image-guided lung intervention.
IEEE Trans Biomed Eng. 2013 Jul;60(7):2034-41. PMID: 23434600
 
He T, Xue Z, Alvarado MV, Wong KK, Xie W, Wong ST.
Nonlinear motion compensation using cubature Kalman filter for in vivo fluorescence microendoscopy in peripheral lung cancer intervention.
J Biomed Opt. 2013 Jan 1;18(1):16008. PMID: 23291716
 
Ellmore TM, Li H, Xue Z, Wong ST, Frye RE.
Tract-based spatial statistics reveal altered relationship between non-verbal reasoning abilities and white matter integrity in autism spectrum disorder.
J Int Neuropsychol Soc. 2013 Jul;19(6):723-8. PMID: 23561717
 

Special Journal Issue

Tsiknakis M, Pattichis CS, Promponas V, Graf N, Wang M, Wong ST, Bourbakis N.
Computational solutions to large-scale data management and analysis in translational and personalized medicine. IEEE Journal of Biomedical and Health Informatics, 2013.